Log of /tags/release/c07.02.02/scripts

script paths updated to work on branch as set up on my disk

cddefines.h - add visual studio pragma to disable warning on use of str functions

ion_recomb_Badnell.cpp - cosmetic changes

*.in revise asserted quantities after bugfix in r828

tsuite/programs adjusted perl script run_programs.pl to work with cpp source and g++ - also now executes the program.  

scripts - better load leveling

conv_fail.cpp - flush buffer before exit so that all print comes out

mole_h_step.cpp - turn on McCall H3+ DR rates, this changes many test suite results which will be updated after tests are complete - this had been debugged but not turned on in jan 06

prt_comment.cpp - do not print comment about maser lines in iso seq when levels are affected by topoff

prt_lines.cpp - fix typos

prt_lines_continuum.cpp - formatting

rt_diffuse.cpp - zero out arrays before abort return, prevents NaN from propagating into code during abort

service.cpp - add casts two places

agn_S_curve_grid.in - add output option

optimize_phymir.in - remove sequential so it runs in parallel

nightly_copy_files_original.pl, nightly_copy_source.pl - change *.c to *.cpp in copying source to ftp dir and creating backups

elementnames.h - comments - this contains a constructor written by PvH, the first C++ code in cloudy.

scripts - load leveling - lightning now slower, do fewer there, more on cumulus

LineList_PDR_H2.dat - att higher H2 lines needed for Helix project

func_grid.in - order of options on grid command changed

cddrive.c, .h, lines_service, rm cdPrtWl for lines, this just called prt_wl, so now all routines call prt_wl

prt_lines_helium.c - mean wavelength of three lines of 2 ^3S - 2 ^3P multiplet is used, with label TOTL, rather than first line in the multiplet

change in multiplet wavelength required that several line list files also change

update readme.txt for scripts

assert_results - add three molecules to those whose column densities can be assertetd
cddrive.c - add three molecules to cdColm 
three added are CN, CH, and CH+

mole_co_etc.c - gather together rates that depend only on temp or rad field, and do not reevaluate them unless quantities have changed - several duplicate rates would found and removed, and two cases where rate multiply defined with second being incorrect were found.  this caused some changes in molecular column densities - not large

prt_lines_lv1_k_zn - make list of Fe 3 lines that come from model atom added by Blagrave


perl scripts - remove nice -n 5 since this pushed scripted runs to too low a priority

*.in - small effects of bug fixes in mole_co_etc.c

pdr_co_fully_noneq.in - add this with non-equil chem turned on
pdr_co_fully.in - add turbulence to this so that pdr_co_fully_noneq.in is totally parallel

scripts/nightly_runL_tsuite_part2.pl:
  Resurrecting the version from r324. Changed nimbus -> cumulus.

nightly_run_tsuite.pl - change nice to -n 2 from -n 5 to give more priority on lightning.

prt.c - small change in format for one print

TS ran clean

perl scripts, rename current to trunk

pressure.h, struc.h - change name PresRadCurr to pres_radiation_lines_curr to make clear that this is line radiation pressure not continuum

punch pressure, column title Prad changed to Prad(line) to make clear line not continuum

parse_atomhlike.c atom h-like pyman pump scale factor will be log if negative

add pressure to dynamics*.in

bands_continuum.dat - warn that continuum near pah features depends on continuum band width due to finite number of cells

copy_source.pl - active source is now source_hot which will update to ftp - only merged with source after passing tests the next day

prt_lines_lv1_k_zn.c - adjust comment

add basename for all directories as separate var so easy to move trunk to other locations

adjust load leveling of perl scripts for two machines

replaced deleted date.h in scripts - this is needed for script to run

scripts - cosmetic changes

mean.c fix typo at line 166

programs - change calls to cdGet that reference routines with changed names

minor changes in formatting, fabden now aborts rather than pressing on, as appropriate for release code.

adjust file properties for ascii and perl files - no source change

update "current" to "trunk" in scripts