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Revision Tasks Age Author
2149 Directory Listing
Modified 14 years ago
Thu Jul 3 12:49:34 2008 UTC
peter
Log:
Create 3rd release tag - fixed runall.pl so that it runs the full auto test suite.

1266 Directory Listing
Modified 15 years ago
Fri Jul 6 19:11:20 2007 UTC
peter
Original Path: branches/c07.02_branch/data
Log:
source/Makefile:
docs/quick_start_07_02.pdf:
data/rate05_feb17.csv:
  Fix file properties.

920 Directory Listing
Modified 15 years, 4 months ago
Wed Feb 28 20:55:16 2007 UTC
gary
Original Path: branches/c07.02_branch/data
Log:
date.h - explain that day is now the subversion number, 00 for initial release

rest are merge of r919 on mainline
902 Directory Listing
Modified 15 years, 4 months ago
Mon Feb 26 01:29:50 2007 UTC
gary
Original Path: branches/c07.02_branch/data
Log:
remove mole_co_*.dat data files, which are not used in this version
884 Directory Listing
Modified 15 years, 4 months ago
Thu Feb 22 20:34:16 2007 UTC
gary
Original Path: branches/c07.02_branch/data
Log:
merge of r883

845 Directory Listing
Modified 15 years, 4 months ago
Wed Feb 14 17:13:16 2007 UTC
gary
Original Path: branches/c07.02_branch/data
Log:
create new branch for C07.02 release
805 Directory Listing
Modified 15 years, 5 months ago
Fri Jan 26 06:27:24 2007 UTC
gary
Original Path: trunk/data
Log:
these are a series of updates related to the Gu et al. 2006 UTA transition data
MAJOR CHANGE - bug fix in gu et al data set, do not use Kisielius data by default

UTA_Gu06.dat - this file was sent to me by Ming on the day that their paper was posted on astro-ph.  I had emailed asking for it.  Tests with Netzer showed that the data file was quite different from the version actually published in the ApJ.  The data file was updated to the published version but with integers for the roman numerals and an updated magic number

tests showed that the Kisielius UTA data set were very irregular and agreed poorly with Gu et al. data, which has smooth variation with charge.  Do not use Kisielius data by default any more - use Gu et al. 2006

source files changes are related to using this data file and including UTA line heating

the heat element of the UTALinies structure now contains the heating per UTA pump.  this is different from the usual meaning of heat in other instances of the EmLines structure.  heat is now set one time at setup and in several places protected against being set to zero (which is needed for usual EmLines data).  

atmdat_lines_setup.cpp - do not init heat to zero

atmdat_readin.cpp - update magic number for Gu data file, set heat as incident photon energy minus shell energy, set energyErg for UTALines (had not been set to anything before), define heat as heat per pump - Gu data set does not have upper and lower statistical weights defined, so use absorption oscillator strength to get Bul, define heat for all UTALines, not just new Gu data set,

ionbal.h - rename lgInnerShellRomas to lgInnerShell_Kisielius since paper is Kisielius et al., add **UTA_heat_rate to save heating per element and ion

conv_base.cpp - define UTA_heat_rate for all elements and ions

heat_punch.cpp - identify UTA heating as string when important

iso_create.cpp - do not zero UTALines heat since contains heat per pump
rt_tau_init.cpp - do not zero UTALines heat since contains heat per pump
rt_tau_reset.cpp - do not zero UTALines heat since contains heat per pump

zero.cpp - set up UTA heating array ionbal.UTA_heat_rate, do not use Kisielius data by default
heat_sum.cpp - define UTA heating as local var photo_heat_UTA, clean up comments

parse_dont.cpp - no uta command no longer has "romas" keyword - command is not only "no uta" with no options

parse_set - "set UTA" now has more options.  "set UTA Gu06" has keywords ON and OFF - default is ON.  "set UTA Kisielius" is new and has keywords ON and OFF and default is OFF - this is a change - had been used by default


*.in - these changed as result of changes in UTA treatment


787 Directory Listing
Modified 15 years, 5 months ago
Wed Jan 17 00:14:51 2007 UTC
gary
Original Path: trunk/data
Log:
pdr_leiden_hack.ini - SET H2 SOLOMON command is now SET H2 SMALL MODEL

atmdat_readin.cpp - simplify evaluation of UTA ionization yield

ionbal.h rename ionbal.xInnerShellIonize to ionbal.UTA_ionize_rate to better reflect the physics of the process

hmi.h - separate out different representations of small model H2
cool_eval.cpp - clean up evaluation of distinct methods of the small model H2
iter_startend.cpp - only int H2 vars that are used

dense.h - fix typos

hydrobranch.cpp - init nd2 at line 52 to stop comment of possibly unit var

change all ASSERT( a == a) tests for NaN to ASSERT( !isnan(a) )

mole_h2.cpp fix typos, do not save old heat rate in case where large H2 is not evaluated

mole_h2_etc.cpp - fix typos

mole_h_drive.cpp add Burton et al. 1990 approximation to dissociation rates

mole_h_step.cpp - break apart Elwert and burton et al. approximation to dissociation rates

parse)set.cpp - change SET H2 SOLOMON to SET H2 SMALL MODEL, add "BHT90" option to use Burton et al. paper

orion_hii_pdr.in - changed values due to bug fix
771 Directory Listing
Modified 15 years, 5 months ago
Wed Jan 10 06:30:30 2007 UTC
peter
Original Path: trunk/data
Log:
source/optimize_subplx.cpp:
source/opacity_createall.cpp:
source/hydro_vs_rates.cpp:
source/hydrobranch.cpp:
source/hydrocollid.cpp:
source/hydrogenic.h:
data/hydrobranch.dat:
  - Removing more block data initialization code. All the ones in active code have now
    been romoved! Moved hydrogenic branching ratios into new separate data file.
source/atmdat_adfa.cpp:
  - Minor improvements.
source/mole_co_reactions.cpp:
source/mole_co_etc.cpp:
  - Bug-fix for PR14. The CO network was leaking memory in optimizer runs. This is a
    temporary fix to stop the leaks.
source/parse_set.cpp:
source/mole_h_step.cpp:
  - Bug-fix: Branch for using constant H2 grain formation rate could not be reached.
    Bug discovered by Robin Williams and fixed by Nick Abel.

767 Directory Listing
Modified 15 years, 5 months ago
Tue Jan 9 15:48:48 2007 UTC
gary
Original Path: trunk/data
Log:
crash.in - add script with tests of crash command

cddrive.cpp - give more information if cdColm cannot find species

parse_crashdo.cpp - clean up commments, and output, remove unused header

parse_optimize.cpp - minor style and comment changes

punch_average.cpp - clean up, better diagnostics if something goes wrong

pn_paris.in - include punch average command
745 Directory Listing
Modified 15 years, 6 months ago
Sat Dec 23 16:45:04 2006 UTC
rjrw
Original Path: trunk/data
Log:
Convert further expressions to constants in data file.

737 Directory Listing
Modified 15 years, 6 months ago
Mon Dec 18 23:34:23 2006 UTC
rjrw
Original Path: trunk/data
Log:
...and a few more (expressions converted to pure numbers)

736 Directory Listing
Modified 15 years, 6 months ago
Mon Dec 18 23:13:58 2006 UTC
rjrw
Original Path: trunk/data
Log:
Fix some slight format errors in base CO network data

735 Directory Listing
Modified 15 years, 6 months ago
Mon Dec 18 22:37:15 2006 UTC
rjrw
Original Path: trunk/data
Log:
Data files containing base CO network reactions

719 Directory Listing
Modified 15 years, 6 months ago
Thu Dec 14 18:57:22 2006 UTC
rjrw
Original Path: trunk/data
Log:
Add the udfa chemical data rates.

681 Directory Listing
Modified 15 years, 7 months ago
Tue Dec 5 17:17:30 2006 UTC
peter
Original Path: trunk/data
Log:
The main purpose of this commit is to split off the atomic data from Dima
Verner's Atomic Data for Astrophysics (ADfA) routines into separate data files
in the data directory. These used to be block data statements in the fortran
code and had been inlined as data initialization loops in the C code by the
fortran to C conversion program.

source/atmdat_h_photocs_fit.cpp:
source/atmdat_phfit.cpp:
source/atmdat_H_phot_cs.cpp:
source/atmdat_coll_ion.cpp:
source/atmdat_rad_rec.cpp:
source/atmdat_rec_lines.cpp:
source/atmdat_h_rad_rec.cpp:
  Deleted.
source/atmdat.h
source/atmdat_adfa.cpp
  New data structure and routines to store the ADfA data. All the routines
  accessing the data that used to be in the deleted files above have been
  moved here.
source/punch_do.cpp
source/punch_opacity.cpp
source/opacity_addtotal.cpp
source/helike.cpp
source/cont_gammas.cpp
source/pressure_total.cpp
source/opacity_createall.cpp
source/iso_create.cpp
source/cont_createpointers.cpp
  Multiple minor changes to deal with the new data layout.
data/phfit.dat
data/hpfit.dat
data/h_phot_cs.dat
data/rad_rec.dat
data/coll_ion.dat
data/h_rad_rec.dat
data/rec_lines.dat
  New files containing the data from the old block data statements.

source/grains_mie.cpp
  Add references to the origin of some of the routines.

636 Directory Listing
Modified 15 years, 7 months ago
Sun Nov 26 21:47:51 2006 UTC
gary
Original Path: trunk/data
Log:
updated Fe UTA to Gu et al. 2006

ionbal.h add global variable lgInnerShell_Gu06 to setlect between Gu or Behar UTA data

zero.cpp - use Gu 06 UTA data by default

parse_set.cpp - set UTA command introduced

atmdat_readin.cpp - option to use either gu or behar uta data, now gu uta by default, both replaced by Romas data where available

renamed UTA data files to UTA_author.dat for consistency

635 Directory Listing
Modified 15 years, 7 months ago
Sun Nov 26 13:57:01 2006 UTC
gary
Original Path: trunk/data
Log:
cannot rename within svn while prevoius commit/rename is pending.  commit this rename so that the next rename can happen
495 Directory Listing
Modified 15 years, 10 months ago
Thu Sep 7 01:49:21 2006 UTC
gary
Original Path: trunk/data
Log:
cddefines.h - improve comments

geometry.h variable AngleIllum was actually the direcional cosign.  split into two variables, AngleIllumRadian - angle away from normal in radians, and DirectionalCosin, the directional cosign

ParseDriveCmnd renamed to ParseDrive

parse_commands cnange call to ParseDriveCmnd to new name, rework illuminate command to keep two vars separate, add vary option to illuminate so that we can run grid with it

add drive E1 command

LineList_HeH.dat - add comments tha tfile needs lines that are not predicted by default

pdr_leiden_f1.in - add punch co chemistry


493 Directory Listing
Modified 15 years, 10 months ago
Sat Sep 2 20:58:40 2006 UTC
gary
Original Path: trunk/data
Log:
scripts - load leveling - lightning now slower, do fewer there, more on cumulus

LineList_PDR_H2.dat - att higher H2 lines needed for Helix project

func_grid.in - order of options on grid command changed


491 Directory Listing
Modified 15 years, 10 months ago
Thu Aug 31 21:33:49 2006 UTC
gary
Original Path: trunk/data
Log:
add inward OI and CII lines to LineList_PDR.dat and add Helix He lines to LineList_PDR_H2.dat
486 Directory Listing
Modified 15 years, 10 months ago
Sat Aug 19 14:55:50 2006 UTC
gary
Original Path: trunk/data
Log:
cddrive.c, .h, lines_service, rm cdPrtWl for lines, this just called prt_wl, so now all routines call prt_wl

prt_lines_helium.c - mean wavelength of three lines of 2 ^3S - 2 ^3P multiplet is used, with label TOTL, rather than first line in the multiplet

change in multiplet wavelength required that several line list files also change


484 Directory Listing
Modified 15 years, 10 months ago
Fri Aug 18 18:03:13 2006 UTC
gary
Original Path: trunk/data
Log:
helike.h - update magic number for he-seq trans prob data file

helike_einsta - use Johnson As for up to & including Ar, higher Z use Lin et al
Johnson did not include higher than Ar so was extrapolation

helike_level - do not set PopLTE to zero for levels within lowered continuum

iso_cool - loop for coll ion cool - 3bod heat went to numLevels_max, should have been local to treat only levels that are active for this continuum -lowered model of atom

iso_ionize_recombine - similar change

prt_lines_helium - changes in prediction of satellite line intensities
2^3P - 2^3S multiplet wavelength now mean of three lines


477 Directory Listing
Modified 15 years, 10 months ago
Sat Aug 12 08:20:55 2006 UTC
gary
Original Path: trunk/data
Log:
NA modified some bands in bands_continuum.dat

cont_createpointers.c fixed bug in how wl was scanned off the data lines in this file - now require label to extend over first 4 then start number in col 6 - number had been scanned off starting in col 4 so could pick up end of label

the LineList_PDR.dat and LineList_PDR_H2.dat labels & wl changed

474 Directory Listing
Modified 15 years, 10 months ago
Fri Aug 11 19:37:24 2006 UTC
gary
Original Path: trunk/data
Log:
update coll str for fe12 line to storey et al. 2005

atom_feii.c - add comments

atmdat_readin.c - chng magic numbers for level2.dat, fix comments and references

cool_dima.c add reference to mewe paper for g-bar coll stren

hot-issues udpate

more_h2_io.c also print product Aul hnu a_ul

prt_lines_hydro.c - comments update



468 Directory Listing
Modified 15 years, 11 months ago
Mon Aug 7 09:38:43 2006 UTC
gary
Original Path: trunk/data
Log:
bands_continuum.dat - details of some continuum bands changed as per NA email of Jul 25.

cont_createpointers.c - magic number changed
452 Directory Listing
Modified 15 years, 11 months ago
Wed Jul 26 12:48:32 2006 UTC
gary
Original Path: trunk/data
Log:
atmdat_char_tran.c - update mg0 & si0 charge trans ion with H+ to umist 05

atom_pop3 - assert physical quantities are >= 0

cool_oxygen - update [oii] and [oiii] collision strengths

grains.c - attempt at getting bakes hack to work with grain physics is turned off - this is critical for debugging hydro models.  heating now vastly too large and commented out

prt_final update [oiii] cs to be parallel with cool_oxygen


*.in - many changes in results due to CT and cs changes

bands_continuum.dat - NA add total lumin
443 Directory Listing
Modified 15 years, 11 months ago
Sat Jul 22 19:52:07 2006 UTC
gary
Original Path: trunk/data
Log:
bugfix cddrive.c - routine cdLine - if not lines exist at all, used to fail by accessing invalid array element, now declares insanity.  This can't happen but did when calling the routine with a NaN wavelength

minor changes in comments in other routines


434 Directory Listing
Modified 15 years, 11 months ago
Wed Jul 12 15:33:19 2006 UTC
peter
Original Path: trunk/data
Log:
data/vanhoof_grain_model.tex:
data/vanhoof_grain_model.ps:
  Deleted.
data/vanhoof_grain_model.pdf:
docs/vanhoof_grain_model.pdf:
  Moved to more appropriate location.
source/grains_mie.c:
  Bug-fix - guard against roundoff error in mie_find_slope().

399 Directory Listing
Modified 16 years ago
Tue Jun 27 21:01:22 2006 UTC
gary
Original Path: trunk/data
Log:
zero.c - bugfix - memory leave of several malloc'd vars

level1.dat - fix typo in description of gf - it and A are log if negative, linear if positive,
comment was incorrect

atom_feii.c bugfix - zero col arrays when number of levels trimmed down

333 Directory Listing
Modified 16 years, 1 month ago
Sat May 20 21:52:32 2006 UTC
gary
Original Path: trunk/data
Log:
punch line optical depth command added

number off changes introduced by Ryan Porter:
assert_results.c - RP add options to suggest asserted line wavelength if no line found

cddrive, parse_commands, accept grid command as form of optimize grid

set line precision command now does 6 digits

323 Directory Listing
Modified 16 years, 1 month ago
Tue May 16 13:23:44 2006 UTC
gary
Original Path: trunk/data
Log:
add lines to LineList* so that optical and HII region lines are also extracted

lines_service.c - correct citation to AQ

parse_optimize.c - optimize xspec also accepts optimize grid 

func_ion_increase.in - correct misnamed type of test in comment

316 Directory Listing
Modified 16 years, 2 months ago
Tue May 9 14:07:35 2006 UTC
gary
Original Path: trunk/data
Log:
cool_nitr.c - small format change in a comment

LineList_PDR.dat, LineList_PDR_H2.dat, add optical H+ region lines

310 Directory Listing
Modified 16 years, 2 months ago
Mon Apr 24 21:27:12 2006 UTC
gary
Original Path: trunk/data
Log:
*.ini, change "print on" to "print on " - gcc on two new machines did not match on keyword - for some reason trailing space not added on with gcc

orion_hii_open.in - at print line optical depths to see HeI optical depths in orion

prt_alltau.c - changes in print helium optical depths - give lowest give continuum edges also give several explicit lines rather than cryptic code
292 Directory Listing
Modified 16 years, 2 months ago
Tue Apr 11 14:58:46 2006 UTC
gary
Original Path: trunk/data
Log:
parse_punch - punch feii lines now gives wavelength

atom_feii - several
read table of energies into new var Fe2Energies - in wavenumbers
energies are read in from file fe2energies.dat
routine FeIISumBand bug fix error in conversion wl to erg, use all wl instead
	error caused shift if spectrum.  also spectrum was always vacuum, is
	now air for wl > 2000A

large number of expanded tests on malloc changed to call to BadMalloc

feii_pump.in - results changed because of shift in spectrum

290 Directory Listing
Modified 16 years, 2 months ago
Mon Apr 10 18:11:00 2006 UTC
gary
Original Path: trunk/data
Log:
bands_continuum.dat - warn that continuum near pah features depends on continuum band width due to finite number of cells

copy_source.pl - active source is now source_hot which will update to ftp - only merged with source after passing tests the next day

prt_lines_lv1_k_zn.c - adjust comment
275 Directory Listing
Modified 16 years, 3 months ago
Tue Mar 28 02:56:57 2006 UTC
gary
Original Path: trunk/data
Log:
update Badnell DR rates - badnell_dr.dat - new file from his web site, ion_recomb_Badnell.c - change to use only m=1 state, use new magic number (date he posted file)
245 Directory Listing
Modified 16 years, 3 months ago
Tue Mar 14 00:17:40 2006 UTC
gary
Original Path: trunk/data
Log:
bands_continuum.dat - add pah features and update magic number

cont_createpointers.c - update magic number for bands_continuum.dat, add trace continuum output for points in bands_continuum.dat

cool_nitr.c, coolheavy.h, prt_lines_lv1_li_ne.c - update N I to 5-level atom with better atomic data - Terry Yun

prt_lines_continuum.c - include bands in emergent continuum

nlr_paris.in, nova_dqher.in - changes due to updated N I atom


203 Directory Listing
Modified 16 years, 4 months ago
Tue Feb 21 12:56:37 2006 UTC
gary
Original Path: trunk/data
Log:
LineList_PDR.dat and LineList_PDR_H2.dat add broad band continuum points contained in bands_continuum.dat to pick up dust emission in pdr models

bands_continuum.dat - add comment that wavelengths MUST be in microns

cont_createpointers.c - bug fix, wavelength used for ID of band was interpreted in ang rather than microns, id was wrong but numbers were correct

pressure_change.c - bug fix, for fabden checked pressure itself rather than change in pressure for generating warning.

187 Directory Listing
Modified 16 years, 4 months ago
Wed Feb 8 15:21:40 2006 UTC
gary
Original Path: trunk/data
Log:
badnell_dr.dat & badnell_rr.dat - remove special magic number, use his comment as version control
ion_recomb_Badnell.c - obtain magic number from comment rather than special line, should not be possible to use his recom data file straight from his web site

ion_carbo.c - comments on nussbaumer & storey dr
ion_recomb.c - use gentle exp(-1000K/Te) temp cuttoff for guesses of DR rates

lines_service.c - add debug print option

parse_punch.c - chng header output for punch ion con to make clear that continuum array index is on C not F scale

rt_diffuse.c - comments

sims - the changed boltzmann factor in the DR guess changes the ionization of 1-4 charged species that have no real DR rates, by  5 - 10%.

182 Directory Listing
Modified 16 years, 5 months ago
Sun Feb 5 15:58:50 2006 UTC
gary
Original Path: trunk/data
Log:
Terry Yun update ion_DR_Badnell.c to use date in badnell_dr.dat and badnell_rr.dat as magic numbers.

update dr file to 20060127, some fits changed, in impact on results

cont_setintensity.c - better explanation of error when intensity of continuum is specified outside range of table
181 Directory Listing
Modified 16 years, 5 months ago
Sat Feb 4 13:06:13 2006 UTC
gary
Original Path: trunk/data
Log:
LineList_PDR.dat and LineList_PDR_H2.dat - add HI and vs lines seen by Spitzer

cont_setintensity.c - bug where ffun would be evaluated outside range of frequency cell, lead to insanity later.  added min and max to keep mean energy within cell

major change is definition of mean Badnell DR recombination rates.  These are now used in place of the Kraemer kuldge for DR of higher charge ions.  highly ionized species are more ionized as a result.  this give a better representation of the temperature and charge dependence of the DR.  many sims changed as a result, in many cases mitigating the changes introduced when the Kraemer DR guesses were introduced.
178 Directory Listing
Modified 16 years, 5 months ago
Tue Jan 31 22:50:06 2006 UTC
gary
Original Path: trunk/data
Log:
return to lexington after two weeks in Pune.  Most ports were blocked so it was not possible to update repo for entire time.

major activity:
Ryan Porter updated iso levels to include continuum lowering for hydrogen like series.  not actually turned on but it could be.

xi command, parse of ionization parameter in parse_ionpar.c started in col 5 so often would miss start of number

printed H2 column density at end of standard output was total column density in protons not H2 molecules.  changed to total number of molecules.  only one print statement was affected.

170 Directory Listing
Modified 16 years, 5 months ago
Fri Jan 20 13:31:42 2006 UTC
gary
Original Path: trunk/data
Log:
Terry Yun update Badnell rr both source and data.

small change in comments on cool_sili.c

add radnell rr routine to ionbal.h

init vars in zero.c
164 Directory Listing
Modified 16 years, 5 months ago
Thu Jan 12 20:00:37 2006 UTC
gary
Original Path: trunk/data
Log:
add thermal destruction of ices for kinetic temperatures greater than 100K

changed CO ice on grains in h2_cr_grains.in and h2_solomon.in

update comments in bands_continuum.dat
162 Directory Listing
Modified 16 years, 6 months ago
Sat Jan 7 16:41:15 2006 UTC
gary
Original Path: trunk/data
Log:
bands_continuum.dat - NA added several more bands with defn fro ipac web site

cddrive.c - cdColm - add H2vJ option for obtaining level-specific column densities for large H2 atom.  makes it possible to optimize H2 column densities.

cont_createpointers.c - update magic number for bands_continuum.dat
143 Directory Listing
Modified 16 years, 6 months ago
Mon Jan 2 22:33:59 2006 UTC
gary
Original Path: trunk/data
Log:
bands_continuum.dat - change comment to make clear that # is comment

dayslow_master.pl - change log file name so also starts dayslow.

scripts/readme.txt - explain bounds and log file name in dayslow_master.pl

parse_crashdo.c - output vars after crash should have occurred to keep lint happy
124 Directory Listing
Modified 16 years, 6 months ago
Wed Dec 28 02:15:50 2005 UTC
gary
Original Path: trunk/data
Log:
update badnell_rr.dat to nigel's current version
edits in hot_issues.txt and to_do.mdb
collion now use Badnell DR data
121 Directory Listing
Modified 16 years, 6 months ago
Sun Dec 25 23:10:40 2005 UTC
gary
Original Path: trunk/data
Log:
minor changes in formatting, fabden now aborts rather than pressing on, as appropriate for release code.
109 Directory Listing
Modified 16 years, 6 months ago
Fri Dec 23 22:13:00 2005 UTC
gary
Original Path: trunk/data
Log:
grain_ion_charge_transfer - grain ionization recombination of atoms and ions, deleted - it set two variables that were not used by the code.  The ionization / recombination is totally done with the gv structure.  Cleaned up ion_solver.c - this still contained old code by tri-diagonal solver.  

cleaned up files in source - formatting, references, TODO list.  no change in functionality.  Ran all perl scripts in source and adjusted their output files.  
105 Directory Listing
Modified 16 years, 6 months ago
Thu Dec 22 16:17:59 2005 UTC
gary
Original Path: trunk/data
Log:
two independent changes here:

the uta directory below data should not have been included in the repository.  they were working files that were provided by Kisielius & Keenan.  Deleted.

Merged in Ryan Porters changes to the He-like iso sequence.  these made a finer grid on the tabulated recombination coefficients, used a higher order interpolation method for extracting these recombination coefficients, and adjusted the test suite to trace the changed asserts.  

set line precision command added by RP - increases number of digits in printed wavelength.

cdH2_Line was added to extract a particular H2 line from its quantum indices.

dielectronic recombination command changed to set direlectronic recombination

RP made changes to optimization code used to create xspec interface.

believe that test suite will run cleanly.
104 Directory Listing
Modified 16 years, 6 months ago
Wed Dec 21 17:07:21 2005 UTC
gary
Original Path: trunk/data
Log:
incorporate Badnell DR rates, although not on by default.
atmdat_readin.c - has call to ion_DR_Badnell.c init routin
ion_recomb.c incorporates DR code
several changes across header files and others to support this
agn_warm_absorber.in - update assert from previous change in Fe cs
96 Directory Listing
Modified 16 years, 6 months ago
Mon Dec 19 22:51:17 2005 UTC
gary
Original Path: trunk/data
Log:
these are a series of changes relating to multi-level models of Fe emission.  new multi-level models of FeIII, FeXI, and Fe XIII were introduced.  other changes were to infrastructure in support of these new models.  Some atomic data were updated, and other FeXI lines removed, from level1.dat.

correction to utilitymacros.h fixed warning issued by g++ when *.c renamed to *.cpp

agn_warm_absorber.in and blr_n09_p22_Z20.in had asserted results that changed as result of improved Fe emission.  Updated to current predictions.

h2_orion_hii_pdr.in - failures in CO chemistry were due to going so deep into the molecular cloud that grain temps fell to such small values that catalysis of H2 no longer occurred.  Cosmic rays still destroyed H2 so H had a transition from H2 to H0.  changed to stop at AV of 1000
62 Directory Listing
Modified 16 years, 7 months ago
Thu Dec 8 23:06:06 2005 UTC
gary
Original Path: trunk/data
Log:
in zero.c made Torsten Elwert's approximation to the Solomon rates the default.  pdr_leiden_hack.ini - added command to make BD96 used for the hacked models.  many pdr models changed as a result, documented and changed the asserted values.
40 Directory Listing
Modified 16 years, 7 months ago
Sun Nov 27 17:14:10 2005 UTC
gary
Original Path: trunk/data
Log:
end a series of changes dealing with H2 photo heating

heat_sum add photoelectric and bound compton heating by H2, H2+, and H3+

mole_h_step usee Yun et al. photoionization cross section for H2, for H2+ had used 2*H0 photo rate, change to just H0 rate since this is a one-electron system

opacity_addtotal.c use Yun et al photo cs for H2 opacity, had been 2H0, include H2 in bound compton opacity, had not been included
16 Directory Listing
Modified 16 years, 7 months ago
Wed Nov 23 15:01:36 2005 UTC
peter
Original Path: trunk/data
Log:
Changed eol-style property to native on various *.dat files in data/uta and
  tsuite/auto.

optimize_input.c: bug-fix
  variable limit exceeded was handled incorrectly by optimizer.
grid_input.c: bug-fix
  same problem, same fix.

15 Directory Listing
Modified 16 years, 7 months ago
Wed Nov 23 14:14:43 2005 UTC
gary
Original Path: trunk/data
Log:
add three stellar atmosphere data files to ignore list
14 Directory Listing
Modified 16 years, 7 months ago
Wed Nov 23 14:12:43 2005 UTC
gary
Original Path: trunk/data
Log:
small changes in punch output file names for test suite

remove some stellar atmosphere data from repos
13 Directory Listing
Modified 16 years, 7 months ago
Wed Nov 23 02:50:16 2005 UTC
gary
Original Path: trunk/data
Log:
adjust file properties for ascii and perl files - no source change
9 Directory Listing
Modified 16 years, 7 months ago
Tue Nov 22 16:27:38 2005 UTC
gary
Original Path: trunk/data
Log:
minor changes to input scripts
8 Directory Listing
Modified 16 years, 7 months ago
Tue Nov 22 12:14:16 2005 UTC
gary
Original Path: trunk/data
Log:
NA update molecule freeze out onto grains

remove external stellar continua from repository

small changes in punch file names for test suite
7 Directory Listing
Modified 16 years, 7 months ago
Tue Nov 22 00:20:25 2005 UTC
gary
Original Path: trunk/data
Log:
NA minor changes in molecular condensation onto grains, change path to point to trunk not current
1 Directory Listing
Added 16 years, 7 months ago
Mon Nov 21 01:32:37 2005 UTC
gary
Original Path: trunk/data
Log:


gary@uky.edu
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